EpiRegio: Analysis and retrieval of regulatory elements linked to genes

• About EpiRegio Web Server
• Overview of possible queries
• Learning of Regulatory EleMents (REMs)
• Cluster of regulatory elements
• Data preprocessing for the EpiRegio webserver
• Future releases
• Cite Us
• Query Guide
  • Gene Query
  • Region Query
  • REM Query
  • Interactive tables
  • Examples file upload
  • Available cell and tissue types
  • Results in detail
    • Gene ID and symbol
    • REM ID
    • Predicted function
    • Model score
    • Cluster of REMs (CREM) ID
    • Number of REMs per CREM
    • Cell type score
    • Cell type DNase1 signal
• Application scenarios
  • How to use EpiRegio to identify TF’s target genes using ChIP-seq peak regions
  • How to use EpiRegio to identify enriched TFs of a set of genes of interest
  • How to use EpiRegio to identify TF-binding sites within REMs of a gene of interest
• REST API
  • General Information
  • GeneQuery
    • Example
  • RegionQuery
    • Example:
  • REMQuery:
    • Example:
  • CREMQuery
    • Example:
  • GeneInfo
    • Example:
  • Programmatic access via Python
• Known Issues
  • Layout issues
  • Server Error (500)
  • The issue with the gene name – ensembl id mapping