EpiRegioDB
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  • About EpiRegio Web Server
  • Overview of possible queries
  • Learning of Regulatory EleMents (REMs)
  • Cluster of regulatory elements
  • Data preprocessing for the EpiRegio webserver
  • Future releases
  • Cite Us
  • Query Guide
  • Application scenarios
  • REST API
  • Known Issues
EpiRegioDB
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  • EpiRegio: Analysis and retrieval of regulatory elements linked to genes
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EpiRegio: Analysis and retrieval of regulatory elements linked to genes¶

  • About EpiRegio Web Server
  • Overview of possible queries
  • Learning of Regulatory EleMents (REMs)
  • Cluster of regulatory elements
  • Data preprocessing for the EpiRegio webserver
  • Future releases
  • Cite Us
  • Query Guide
    • Gene Query
    • Region Query
    • REM Query
    • Interactive tables
    • Examples file upload
    • Available cell and tissue types
    • Results in detail
      • Gene ID and symbol
      • REM ID
      • Predicted function
      • Model score
      • Cluster of REMs (CREM) ID
      • Number of REMs per CREM
      • Cell type score
      • Cell type DNase1 signal
  • Application scenarios
    • How to use EpiRegio to identify TF’s target genes using ChIP-seq peak regions
    • How to use EpiRegio to identify enriched TFs of a set of genes of interest
    • How to use EpiRegio to identify TF-binding sites within REMs of a gene of interest
  • REST API
    • General Information
    • GeneQuery
      • Example
    • RegionQuery
      • Example:
    • REMQuery:
      • Example:
    • CREMQuery
      • Example:
    • GeneInfo
      • Example:
    • Programmatic access via Python
  • Known Issues
    • Layout issues
    • Server Error (500)
    • The issue with the gene name – ensembl id mapping
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